Researcher in the role of gene expression in host plant adaptation - Hiring in process/Finished, not possible to apply

Subject description
We are recruiting a researcher  to the ERC-funded project “Hybridization derived novel patterns of gene expression”. This project addresses the role of gene expression in how adaptive variation can arise from hybridization. Two specific questions that will be addressed are 1) to which extent alternative splicing contribute to altered transcriptional profiles in the hybrid Italian sparrow compared to its parent species, and 2) how microRNAs contribute to altered regulation of gene expression, with a specific focus on silencing of expression of transposable elements. The researcher will perform gene expression analyses, help inform study design, contribute to field work, interpret the results in an evolutionary and ecological context, and work with the HybridExpress team consisting of a lab manager, a PhD-student and potentially post docs. The project is led by Associate Senior Lecturer Anna Runemark, and set within the SPeciation, Adaptation and Co-Evolution lab in the biodiversity unit. 

Work duties
The main duty is to perform research, including genomic analysis of alternative splicing for RNA-seq data, and contribute to sampling design as well as analyze whole genome data. In addition to the the bioinformatical analyses of differential expression, the researcher will prepare repeatable work flows (e.g. snake-make pipelines) for the analyses undertaken, develop evolutionary theory based on results, and synthesise the work for publication. The researcher is expected to take active part in the SPeciation, Adaptation and Co-Evolution lab group activities, collaborations and mentorship opportunities. There will be opportunities to develop independent projects and apply for research grants to fund these.

Assessment criteria and other qualifications
This is a career development position primarily focused on research. The main assessment criteria are:

• Strong skills in bioinformatical analysis and interpretation of gene expression data
• A good ability to develop and conduct high quality research
• Expertise in the role of alternative splicing in adaptation from gene expression and its analysis
• Knowledge of microRNA and its regulation of mRNA and TE expression
• Knowledge of reference genome assembly and annotation

Additional assessment criteria:

• Experience in repeatable workflows for bioinformatical analysis
• Background and publication record in evolutionary biology, evolutionary ecology or evolutionary genomics

Consideration will also be given to good collaborative skills, drive and independence, and how the applicant’s experience and skills complement and strengthen ongoing research within the lab group and department, and how they stand to contribute to its future development.

Terms of employment
This is a full-time permanent employment starting from 1 june 2023 or by agreement. Please contact Anna Runemark (anna.runemark@biol.lu.se) for inquiries.

 Instructions on how to apply

Applications shall be written in English and be compiled into a PDF-file containing:

• résumé/CV, including a list of publications
• a general description of past research and future research interests (no more than two pages)
• contact information of at least two references
• copy of the doctoral degree certificate